changegroup: move non-pruning of non-ellipsis manifests to _prunemanifests()
Google has an extension that overrides _prunemanifests() and removes
nodes that we fetch using another mechanism. That broke when
_prunemanifests() no longer got called. It works again if we move the
check for "not self._ellipses" inside _prunemanifests().
Differential Revision: https://phab.mercurial-scm.org/D6004
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